PlantSEED
Automated annotation & genome-scale reconstruction of plant primary metabolism
PlantSEED enables automated functional annotation and reconstruction of plant primary metabolism, with consistent subcellular compartmentalization across species. It is integrated into DOE’s KBase and is now being refactored into a new v3 codebase.
- Role: first author of the PlantSEED resource papers (PNAS, 2014; The Plant Journal, 2018).
- Impact: turns a plant genome into a curated, comparable genome-scale metabolic model.
- Links: GitHub · see the publications page.